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Take aligned BAM file and produce Fragments.tsv.gz, compatible with Signac ATAC-seq style analysis

Source: R/refgenome.R
BascetBam2Fragments.Rd

Take aligned BAM file and produce Fragments.tsv.gz, compatible with Signac ATAC-seq style analysis

Usage

BascetBam2Fragments(
  bascetRoot,
  inputName = "aligned",
  outputName = "fragments",
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Value

A job, producing a type of Fragments.tsv.gz