Gather all count sketches into a single count sketch matrix

TODO binary file format

Usage

BascetGatherCountSketch(
  bascetRoot,
  inputName = "countsketch",
  outputName = "countsketch_mat.csv",
  includeCells = NULL,
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

includeCells

List of cells to process

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascet_instance

Configuration for how to run the Bascet Rust API

Value

A job