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Index a genome using BWA such that it can be used for alignment

Source: R/refgenome.R
BascetIndexGenomeBWA.Rd

Index a genome using BWA such that it can be used for alignment

Usage

BascetIndexGenomeBWA(
  bascetRoot,
  genomeFile,
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Arguments

genomeFile

Name of FASTA file