Run FASTQC on reads of all cells. This is a thin wrapper around BascetMapCell

Run FASTQC on reads of all cells. This is a thin wrapper around BascetMapCell

Usage

BascetMapCellFASTQC(
  bascetRoot,
  inputName = "filtered",
  outputName = "fastqc",
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascet_instance

Configuration for how to run the Bascet Rust API

db

description

Value

TODO