Run GEECCO on contigs of all cells. This is a thin wrapper around BascetMapCell

Run GEECCO on contigs of all cells. This is a thin wrapper around BascetMapCell

Usage

BascetMapCellGECCO(
  bascetRoot,
  inputName = "contigs",
  outputName = "gecco",
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascet_instance

Configuration for how to run the Bascet Rust API

db

description

Value

TODO