Run FASTP for each cell. Input must be in FASTQ file format

Run FASTP for each cell. Input must be in FASTQ file format

Usage

BascetRunFASTP(
  bascetRoot,
  numLocalThreads = 1,
  inputName = "asfq",
  outputName = "fastp",
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascet_instance = GetDefaultBascetInstance()
)

Arguments

useKrakenDB

Path to KRAKEN2 database