Run KRAKEN2 for each cell
Usage
BascetRunKraken(
bascetRoot,
useKrakenDB = "/data/henlab/kraken/standard-8",
numLocalThreads = 1,
inputName = "asfq",
outputName = "kraken_out",
overwrite = FALSE,
runner = GetDefaultBascetRunner(),
bascet_instance = GetDefaultBascetInstance()
)