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Zorn 0.1.0

Install
Get started
- Introductory Vignettes
- Using SLURM
- Debarcoding
- Read-based quality control
- KRAKEN-based workflow
- Alignment-based workflow
- Informative KMER-based workflow
- Count sketch KMER-based workflow
- Clustering
- De novo assembly
- Genome annotation
- Map scripts
- Overview of file formats
- For developers
- Example data
FAQ
Reference

Download a database for AMRfinder

Source: R/ext_tools.R

DownloadDatabaseAMRfinder.Rd

Download a database for AMRfinder

Usage

DownloadDatabaseAMRfinder(dbdir, bascet_instance = GetDefaultBascetInstance())

Developed by Johan Henriksson, Laura Carroll, Hadrien Gourlé, Julian Dicken, Henriksson Lab, Carroll Lab and Collaborators.

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