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Read a KRAKEN2 count matrix as produced by Bascet (hdf5 format)

Source: R/kraken.R
ReadBascetKrakenMatrix.Rd

Read a KRAKEN2 count matrix as produced by Bascet (hdf5 format)

Usage

ReadBascetKrakenMatrix(bascetRoot, inputName = "kraken")

Arguments

fname

Full name of the HDF5 count matrix file

Value

Counts as a sparseMatrix