_R1 – common from illumina sequencer
SRR****_1.fastq.gz – typical from SRA
Usage
bascet_check_overwrite_output(outputFiles, overwrite)
Arguments
- outputFiles
Files that we expect to exist
- overwrite
Files that we expect to exist
Value
TRUE if ok to proceed
Details
TODO Would be convenient to handle multiple samples, as sample1/xxx; in this case,
should prepend the sample name to the barcodes.
issue: when shardifying, good to keep info about what to merge. this reduces the work plenty!
could keep a list of which shards belong for the next step